Wigler Lab

User Tools

Site Tools

Trace: • poetry • publications • videos • start • sab • essays
publications

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision		Previous revision
publications [2023/01/31 09:45] – created davidpublications [2025/11/11 16:13] (current) – patty
Line 1: Line 1:
- 
 ====== Research Publications ====== ====== Research Publications ======
 ^ #  ^ Authors    ^ Year          ^   Title   ^ PDF ^ Notes ^ ^ #  ^ Authors    ^ Year          ^   Title   ^ PDF ^ Notes ^
Line 202: Line 201:
 |~~=row()~~.| Baslan, T., Kendall, J., Volyanskyy, K., McNamara, K., Cox, H., D’Italia, S., Ambrosio, F., Riggs, M., Rodgers, L., Leotta, A., Song, J., Mao, Y., Wu, J., Shah, R.,  Merida, R.G., Chadalavada, K., Nanjangud, G., Varadan, V., Gordon, A., Curtis, C., Krasnitz, A., Dimitrova, N., Harris, L., Wigler, M., and Hicks, J. |2020| Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing. eLife Science, 9: 51480. | {{: Baslan_et_al_eLife_2020.pdf.|PDF}} | |~~=row()~~.| Baslan, T., Kendall, J., Volyanskyy, K., McNamara, K., Cox, H., D’Italia, S., Ambrosio, F., Riggs, M., Rodgers, L., Leotta, A., Song, J., Mao, Y., Wu, J., Shah, R.,  Merida, R.G., Chadalavada, K., Nanjangud, G., Varadan, V., Gordon, A., Curtis, C., Krasnitz, A., Dimitrova, N., Harris, L., Wigler, M., and Hicks, J. |2020| Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing. eLife Science, 9: 51480. | {{: Baslan_et_al_eLife_2020.pdf.|PDF}} |
 |~~=row()~~.| Vasudevan, A., Baruah, P.S., Smith, J.C., Wang, Z., Sayles, N.M., Andrews, P., Kendall, J., Leu, J., Chunduri, N.K., Levy, D., Wigler, M., Storchová, Z., Sheltzer, J.M. |2020| Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. Dev Cell. 4: 413-428.e6. | {{:Vasudevan_et_al_developmental_cell_2020.pdf|PDF}} | |~~=row()~~.| Vasudevan, A., Baruah, P.S., Smith, J.C., Wang, Z., Sayles, N.M., Andrews, P., Kendall, J., Leu, J., Chunduri, N.K., Levy, D., Wigler, M., Storchová, Z., Sheltzer, J.M. |2020| Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. Dev Cell. 4: 413-428.e6. | {{:Vasudevan_et_al_developmental_cell_2020.pdf|PDF}} |
-|~~=row()~~.| Miyabayashi, K, Baker, LA, Deschênes, A,Traub, B, Caligiuri, G, Plenker, D, Alagesan, B, Belleau, P, Li, S, Kendall, J, Jang, GH, Kawaguchi, RK, Somerville, TDD, Tiriac, H, Hwang, CI, Burkhart, RA, Roberts, NJ, Wood, LD, Hruban, RH, Gillis, J, Krasnitz, A, Vakoc, CR, Wigler, M. Notta, F, Gallinger, S, Park, Y, Tuveson, DA. |2020| Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes. Cancer Discovery, 10: 1566-1589.  PMCID:  PMC7664990  |  {{:Miyabayashi_et_al_cancer_discovery_2020.pdf|PDF}} |+|~~=row()~~.| Miyabayashi, K, Baker, LA, Deschênes, A,Traub, B, Caligiuri, G, Plenker, D, Alagesan, B, Belleau, P, Li, S, Kendall, J, Jang, GH, Kawaguchi, RK, Somerville, TDD, Tiriac, H, Hwang, CI, Burkhart, RA, Roberts, NJ, Wood, LD, Hruban, RH, Gillis, J, Krasnitz, A, Vakoc, CR, Wigler, M. Notta, F, Gallinger, S, Park, Y, Tuveson, DA. |2020| Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes. Cancer Discovery, 10: 1566-1589.  PMCID:  PMC7664990  | {{:Miyabayashi_et_al_cancer_discovery_2020.pdf|PDF}} |
 |~~=row()~~.| Yoon S, Munoz A, Yamrom B, Lee Y-h, Andrews P, Marks S, Wang Z, Reeves C, Winterkorn L, Krieger AM, Buja, A, Pradhan K. Ronemus M, Baldwin KK, Levy D, Wigler M, Iossifov I. |2021| Rates of contributory de novo mutation in high and low risk autism families. Nature Communications Biology, 4: 1026.  PMCID:  PMC8410909 | {{:Yoon_et_al_commun_biol_2021.pdf|PDF}} | |~~=row()~~.| Yoon S, Munoz A, Yamrom B, Lee Y-h, Andrews P, Marks S, Wang Z, Reeves C, Winterkorn L, Krieger AM, Buja, A, Pradhan K. Ronemus M, Baldwin KK, Levy D, Wigler M, Iossifov I. |2021| Rates of contributory de novo mutation in high and low risk autism families. Nature Communications Biology, 4: 1026.  PMCID:  PMC8410909 | {{:Yoon_et_al_commun_biol_2021.pdf|PDF}} |
 |~~=row()~~.| Li S, Park S, Ye C, Danyko C, Wroten M, Andrews P, Wigler M, and Levy D. |2022| Targeted de novo phasing and long-range assembly by template mutagenesis.  Nucleic Acids Research, 50: e103.  PMCID: PMC9561374 | {{: Li_et_al_NAR_2022.pdf|PDF}} | |~~=row()~~.| Li S, Park S, Ye C, Danyko C, Wroten M, Andrews P, Wigler M, and Levy D. |2022| Targeted de novo phasing and long-range assembly by template mutagenesis.  Nucleic Acids Research, 50: e103.  PMCID: PMC9561374 | {{: Li_et_al_NAR_2022.pdf|PDF}} |
 |~~=row()~~.| Wang Z, Moffitt A, Andrews P, Wigler M, Levy D. |2022| Accurate measurement of microsatellite length by disrupting its tandem repeat structure.  Nucleic Acids Research 50: e116. PMC9723644 | {{:Wang_et_al_NAR_2022.pdf|PDF}} |  |~~=row()~~.| Wang Z, Moffitt A, Andrews P, Wigler M, Levy D. |2022| Accurate measurement of microsatellite length by disrupting its tandem repeat structure.  Nucleic Acids Research 50: e116. PMC9723644 | {{:Wang_et_al_NAR_2022.pdf|PDF}} | 
-|~~=row()~~.| Li S, Alexander J, Kendall J, Andrews P, Rose E, Orjuela H, Park S, Podszus C, Shanley L, Ma R, Rishi A, Donoho DL, Goldberg GL, Levy D, and Wigler M. |2022| High-throughput single-nucleus hybrid sequencing reveals genome-transcriptome correlations in cancer.  In progress. |+|~~=row()~~.| Wroten M, Yoon S, Andrews P, Yamrom B, Ronemus M, Buja A, Krieger AM, Levy D, Ye K, Wigler M, and Iossifov I. |2023| Sharing parental genomes by siblings concordant or discordant for autism. Cell Genomics 3: 100319. PMCID: PMC10300587 | {{:Wroten_et_al_Cell_Genomics_2023.pdf|PDF}} |  
 +|~~=row()~~.| Li S, Alexander J, Kendall J, Andrews P, Rose E, Orjuela H, Park S, Podszus C, Shanley L, Ma R, Rishi A, Donoho DL, Goldberg GL, Levy D, and Wigler M. |2023| High-throughput single-nucleus hybrid sequencing reveals genome-transcriptome correlations in cancer.  bioRxiv, doi: https://doi.org/10.1101/2023.10.04.560973. | {{:Li_et_al_bioRxiv_2023.pdf|PDF}} | 
 +|~~=row()~~.| Lammertse E, Li S, Kendall J, Kim C, Morris P, Ranade N, Levy D, Wigler M, Brouzes E. |2023| Magnetically functionalized hydrogels for high-throughput genomic applications. Adv Mater Technol 9: (2):2301155. PMCID: PMC11029686. | {{:brouzes_et_al_adv_materials_technologies_2023.pdf|PDF}} | 
 +|~~=row()~~.| Li S, Alexander J, Kendall J, Andrews P, Rose E, Orjuela H, Park S, Podszus C, Shanley L, Ranade N, Morris P, Stauder D, Bradford D, Laster Z, Ronemus M, Rishi A, Frimer M, Ma R, Donoho DL, Goldberg GL, Wigler M, Levy D. |2025| Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples. Genome Biol. 2025 Sep 27;26(1):314. doi: 10.1186/s13059-025-03790-5. PMID: 41015771; PMCID: PMC12476631. | {{:li_et_al_genome_biology_2025.pdf|PDF}} |
 |~~=row()~~.| ============================= | === | ============================================= | == | |~~=row()~~.| ============================= | === | ============================================= | == |
publications.1675176347.txt.gz · Last modified: 2023/01/31 09:45 by david
Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki